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Structural basis for activation of plant immunity by bacterial effector protein AvrPto
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.55M potassium sodium tartrate, 0.1M hepes pH 7.5, 10 mM taurine, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.21 61.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.465 α = 90 b = 94.591 β = 90 c = 98.741 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-03-28 M MAD 2 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2005-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BSRF BEAMLINE 3W1A 0.9794, 0.9797, 0.9 BSRF 3W1A 2 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 3 100 96.2 0.068 20.6 15185 14608 2 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3 3.11 88.6 0.67
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3.2 20 11252 10933 815 97.16 0.27364 0.27364 0.27131 0.3234 0.30337 0.3475 RANDOM 96.291
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.71 3.82 0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.773 r_dihedral_angle_3_deg 18.043 r_dihedral_angle_4_deg 12.924 r_dihedral_angle_1_deg 5.986 r_angle_refined_deg 1.175 r_scangle_it 1.033 r_mcangle_it 0.597 r_scbond_it 0.591 r_mcbond_it 0.334 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.773 r_dihedral_angle_3_deg 18.043 r_dihedral_angle_4_deg 12.924 r_dihedral_angle_1_deg 5.986 r_angle_refined_deg 1.175 r_scangle_it 1.033 r_mcangle_it 0.597 r_scbond_it 0.591 r_mcbond_it 0.334 r_nbtor_refined 0.299 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.2 r_symmetry_hbond_refined 0.199 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.086 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3135 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing