2QJZ

Structural Basis of Microtubule Plus End Tracking by XMAP215, CLIP-170 and EB1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP729311.5% 2-propanol, 190 mM Sodium citrate, 100 mM Hepes, Protein concentration 20 mg/ml, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.0740.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 29.334α = 90
b = 65.22β = 96.24
c = 63.091γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102001-10-10MMAD
21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.10.9798, 1.1271, 0.7999ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.255097.40.0545.413.863420
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.251.2995.70.32132.13.25181

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.2545.2263420631897.320.1770.1740.198RANDOM12.271
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.030.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.235
r_dihedral_angle_4_deg14.908
r_dihedral_angle_3_deg12.164
r_dihedral_angle_1_deg4.434
r_scangle_it3.209
r_sphericity_free2.779
r_sphericity_bonded2.474
r_scbond_it2.269
r_mcangle_it1.55
r_rigid_bond_restr1.461
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.235
r_dihedral_angle_4_deg14.908
r_dihedral_angle_3_deg12.164
r_dihedral_angle_1_deg4.434
r_scangle_it3.209
r_sphericity_free2.779
r_sphericity_bonded2.474
r_scbond_it2.269
r_mcangle_it1.55
r_rigid_bond_restr1.461
r_angle_refined_deg1.033
r_mcbond_it0.999
r_nbtor_refined0.311
r_nbd_refined0.196
r_symmetry_vdw_refined0.176
r_xyhbond_nbd_refined0.096
r_symmetry_hbond_refined0.085
r_chiral_restr0.076
r_bond_refined_d0.008
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1974
Nucleic Acid Atoms
Solvent Atoms302
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
CNSphasing
CNSrefinement
DENZOdata reduction
PDB_EXTRACTdata extraction
Blu-Icedata collection