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Crystal structure of an aspartoacylase family protein (mlr6093) from mesorhizobium loti maff303099 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 NANODROP, 20.0% PEG 3350, 0.2M Potassium citrate, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.29 46.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.054 α = 90 b = 86.14 β = 90 c = 94.632 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 1m long Rh coated bent cylindrical mirror for horizontal and vertical focusing 2007-06-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 0.978662 SSRL BL1-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.643 99.8 0.105 0.105 11.5 4.6 45402 26.79
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 98.7 0.782 0.782 1.7 3.8 3268
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 29.643 45330 2286 99.77 0.209 0.207 0.2094 0.254 0.258 RANDOM 24.569
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.57 -0.25 1.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.683 r_dihedral_angle_3_deg 11.336 r_dihedral_angle_4_deg 11.075 r_scangle_it 5.896 r_scbond_it 4.346 r_dihedral_angle_1_deg 4.003 r_mcangle_it 2.53 r_mcbond_it 1.792 r_angle_refined_deg 1.786 r_angle_other_deg 1.367
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.683 r_dihedral_angle_3_deg 11.336 r_dihedral_angle_4_deg 11.075 r_scangle_it 5.896 r_scbond_it 4.346 r_dihedral_angle_1_deg 4.003 r_mcangle_it 2.53 r_mcbond_it 1.792 r_angle_refined_deg 1.786 r_angle_other_deg 1.367 r_mcbond_other 0.663 r_symmetry_hbond_refined 0.193 r_xyhbond_nbd_refined 0.169 r_nbd_refined 0.165 r_nbtor_refined 0.16 r_nbd_other 0.149 r_symmetry_vdw_other 0.133 r_chiral_restr 0.103 r_nbtor_other 0.082 r_symmetry_vdw_refined 0.075 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4499 Nucleic Acid Atoms Solvent Atoms 282 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing