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Mycobacterium tuberculosis FabD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 10-12% PEG MME 2000, 0.1 M Tris-HCl pH 8.0-8.5, 5-10 mM NiCl2. , VAPOR DIFFUSION
Crystal Properties Matthews coefficient Solvent content 3.41 63.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 180.24 α = 90 b = 180.24 β = 90 c = 95.99 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 cylindrical mirror 2006-02-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.992,1.486 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 48 99.9 0.09 0.09 22.2 13 18818 18818
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.16 99.5 0.34 0.34 7.8 13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3 48 17832 965 99.85 0.22594 0.22383 0.26673 0.2724 RANDOM 63.722
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.45 0.22 0.45 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.708 r_dihedral_angle_3_deg 20.189 r_dihedral_angle_4_deg 16.928 r_dihedral_angle_1_deg 5.503 r_scangle_it 1.454 r_angle_refined_deg 1.206 r_scbond_it 0.817 r_mcangle_it 0.546 r_symmetry_vdw_refined 0.328 r_mcbond_it 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.708 r_dihedral_angle_3_deg 20.189 r_dihedral_angle_4_deg 16.928 r_dihedral_angle_1_deg 5.503 r_scangle_it 1.454 r_angle_refined_deg 1.206 r_scbond_it 0.817 r_mcangle_it 0.546 r_symmetry_vdw_refined 0.328 r_mcbond_it 0.304 r_nbtor_refined 0.296 r_nbd_refined 0.215 r_xyhbond_nbd_refined 0.146 r_symmetry_hbond_refined 0.111 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4548 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement ADSC data collection XDS data reduction XSCALE data scaling SHARP phasing