☰ Navigation Tabs
From Structure to Function: Insights into the Catalytic Substrate Specificity and Thermostability Displayed by Bacillus subtilis mannanase BCman
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.12 290 7.5% PEG4000, 80mM sodium chloride, 100mM sodium citrate (pH5.12), VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.08 40.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.179 α = 83.03 b = 58.785 β = 82.42 c = 63.463 γ = 77.61
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 IMAGE PLATE MAR scanner 345 mm plate 2006-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 8 90.8 0.034 51.9 5.9 95614 95614 3 3 13.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 80.1 0.182 11.3 5.3 95614
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.45 8 3 95614 95614 5158 90.84 0.15984 0.15823 0.1552 0.18993 0.1875 RANDOM 13.881
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.03 0.01 0.04 -0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.581 r_dihedral_angle_4_deg 16.491 r_dihedral_angle_3_deg 11.847 r_dihedral_angle_1_deg 5.935 r_sphericity_free 2.644 r_scangle_it 2.457 r_scbond_it 2.125 r_rigid_bond_restr 2.081 r_sphericity_bonded 1.996 r_mcangle_it 1.133
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.581 r_dihedral_angle_4_deg 16.491 r_dihedral_angle_3_deg 11.847 r_dihedral_angle_1_deg 5.935 r_sphericity_free 2.644 r_scangle_it 2.457 r_scbond_it 2.125 r_rigid_bond_restr 2.081 r_sphericity_bonded 1.996 r_mcangle_it 1.133 r_angle_refined_deg 1.13 r_mcbond_it 0.729 r_nbtor_refined 0.307 r_nbd_refined 0.2 r_symmetry_vdw_refined 0.146 r_xyhbond_nbd_refined 0.134 r_symmetry_hbond_refined 0.132 r_chiral_restr 0.073 r_metal_ion_refined 0.009 r_bond_refined_d 0.007 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5392 Nucleic Acid Atoms Solvent Atoms 909 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection DENZO data reduction SCALEPACK data scaling DM phasing