2QFA

Crystal structure of a Survivin-Borealin-INCENP core complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION629350mM MES pH6, 10% PEG3350, VAPOR DIFFUSION, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.8356.47

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.467α = 90
b = 78.793β = 90
c = 100.017γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA0.99SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.442960.0615.25.16411415.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.41.4880.10.3920.3272.637613

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.44264044380295.690.1860.1840.202RANDOM23.956
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.35-0.14-0.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.036
r_dihedral_angle_4_deg19.407
r_dihedral_angle_3_deg12.741
r_dihedral_angle_1_deg4.422
r_scangle_it3.321
r_sphericity_free2.517
r_scbond_it2.122
r_sphericity_bonded1.738
r_mcangle_it1.544
r_angle_refined_deg1.326
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.036
r_dihedral_angle_4_deg19.407
r_dihedral_angle_3_deg12.741
r_dihedral_angle_1_deg4.422
r_scangle_it3.321
r_sphericity_free2.517
r_scbond_it2.122
r_sphericity_bonded1.738
r_mcangle_it1.544
r_angle_refined_deg1.326
r_rigid_bond_restr1.259
r_mcbond_it1.013
r_nbtor_refined0.308
r_symmetry_vdw_refined0.214
r_nbd_refined0.203
r_chiral_restr0.139
r_xyhbond_nbd_refined0.109
r_symmetry_hbond_refined0.106
r_bond_refined_d0.007
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2090
Nucleic Acid Atoms
Solvent Atoms327
Heterogen Atoms13

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
SCALAdata scaling
SHELXSphasing