☰ Navigation Tabs
Crystal structure of the highly amyloidogenic transthyretin mutant TTR G53S/E54D/L55S- heated protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1G1O pdb entry 1g1o
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 291 0.1M Tris, 2.4M Ammonium sulphate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.04 39.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.36 α = 90 b = 58.36 β = 90 c = 229.16 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2005-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 1.115 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.29 76.472 93.9 0.114 0.114 3.1 9.9 20038
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.29 2.42 92 0.554 0.554 1.4 8.9 2797
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1g1o 2.29 15 19892 1018 93.91 0.234 0.231 0.289 0.2789 RANDOM 37.065
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 0.34 0.68 -1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.277 r_dihedral_angle_3_deg 17.118 r_dihedral_angle_4_deg 13.246 r_dihedral_angle_1_deg 6.758 r_scangle_it 4.471 r_mcangle_it 4.443 r_scbond_it 3.255 r_mcbond_it 2.519 r_angle_refined_deg 1.567 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.277 r_dihedral_angle_3_deg 17.118 r_dihedral_angle_4_deg 13.246 r_dihedral_angle_1_deg 6.758 r_scangle_it 4.471 r_mcangle_it 4.443 r_scbond_it 3.255 r_mcbond_it 2.519 r_angle_refined_deg 1.567 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.285 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.183 r_symmetry_vdw_refined 0.18 r_chiral_restr 0.105 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3472 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction