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Drosophila OBP LUSH D118A mutation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other WT-LUSH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 277 Diffraction-quality crystals grown from microcrystals fed protein, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.13 42.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.805 α = 90 b = 46.805 β = 90 c = 109.757 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 CCD CUSTOM-MADE 2007-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 0.979 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 35.62 100 0.08 10.9 4.87 15955
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 99.8 0.438 3.3 4.78 1600
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT WT-LUSH 2 33 15940 1592 99.97 0.218 0.213 0.262 0.2334 RANDOM 33.447
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.71 -0.71 1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.1 r_dihedral_angle_3_deg 14.129 r_dihedral_angle_4_deg 11.256 r_dihedral_angle_1_deg 4.417 r_mcangle_it 2.209 r_scangle_it 1.988 r_mcbond_it 1.414 r_scbond_it 1.346 r_angle_refined_deg 1.038 r_nbtor_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.1 r_dihedral_angle_3_deg 14.129 r_dihedral_angle_4_deg 11.256 r_dihedral_angle_1_deg 4.417 r_mcangle_it 2.209 r_scangle_it 1.988 r_mcbond_it 1.414 r_scbond_it 1.346 r_angle_refined_deg 1.038 r_nbtor_refined 0.294 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.197 r_symmetry_hbond_refined 0.154 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1975 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 20
Software Software Software Name Purpose d*TREK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection d*TREK data reduction