2QCP

1.0 A Structure of CusF-Ag(I) residues 10-88 from Escherichia coli


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.6298100 mM sodium acetate trihydrate (pH 4.6), 2.3 M ammonium sulfate, 2 mM silver nitrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
1.8734.35

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.118α = 90
b = 39.351β = 90
c = 44.423γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCD2006-07-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.97946SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1119.797.70.04997.75.523595635956
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
111.0495.60.3833.15.09

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1ZEQ119.683415034150180697.710.160.160.1590.186RANDOM9.378
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.10.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg48.331
r_dihedral_angle_3_deg13.806
r_dihedral_angle_4_deg12.901
r_sphericity_free8.928
r_dihedral_angle_1_deg7.49
r_scangle_it6.277
r_scbond_it4.644
r_sphericity_bonded4.636
r_mcangle_it3.702
r_mcbond_it3.218
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg48.331
r_dihedral_angle_3_deg13.806
r_dihedral_angle_4_deg12.901
r_sphericity_free8.928
r_dihedral_angle_1_deg7.49
r_scangle_it6.277
r_scbond_it4.644
r_sphericity_bonded4.636
r_mcangle_it3.702
r_mcbond_it3.218
r_mcbond_other2.744
r_rigid_bond_restr2.1
r_angle_refined_deg1.957
r_angle_other_deg0.925
r_symmetry_vdw_other0.312
r_symmetry_vdw_refined0.229
r_nbd_refined0.221
r_nbd_other0.186
r_symmetry_hbond_refined0.17
r_nbtor_refined0.162
r_xyhbond_nbd_refined0.121
r_chiral_restr0.107
r_nbtor_other0.09
r_bond_refined_d0.017
r_gen_planes_refined0.008
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms622
Nucleic Acid Atoms
Solvent Atoms93
Heterogen Atoms19

Software

Software
Software NamePurpose
SCALAdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
Blu-Icedata collection
CrystalCleardata reduction