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Crystal Structure of Estrogen Receptor Alpha Ligand Binding Domain Mutant 537S Complexed with an Ethyl Indazole Compound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.06 40.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.824 α = 90 b = 83.08 β = 109.13 c = 58.304 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 bent conical Si-mirror (Rh coating) M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.97934 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 50 98.3 0.098 0.098 13.8 3.6 41242 41242 31.89
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.86 1.93 95.9 0.688 0.688 1.91 2.8 4019
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.89 19.54 39668 39668 2012 98.59 0.226 0.224 0.27 0.2721 RANDOM 32.174
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.05 -0.01 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.747 r_dihedral_angle_4_deg 19.297 r_dihedral_angle_3_deg 16.327 r_scangle_it 8.67 r_scbond_it 6.323 r_dihedral_angle_1_deg 4.611 r_mcangle_it 4.009 r_mcbond_it 3.044 r_angle_refined_deg 1.051 r_symmetry_hbond_refined 0.422
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.747 r_dihedral_angle_4_deg 19.297 r_dihedral_angle_3_deg 16.327 r_scangle_it 8.67 r_scbond_it 6.323 r_dihedral_angle_1_deg 4.611 r_mcangle_it 4.009 r_mcbond_it 3.044 r_angle_refined_deg 1.051 r_symmetry_hbond_refined 0.422 r_nbtor_refined 0.315 r_symmetry_vdw_refined 0.306 r_nbd_refined 0.223 r_xyhbond_nbd_refined 0.146 r_chiral_restr 0.071 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4007 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 38
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction MOLREP phasing