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Crystal structure of a thioesterase-like protein (tm0581) from thermotoga maritima msb8 at 2.20 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 NANODROP, 0.8M Lithium chloride, 10.0% PEG 6000, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.347 α = 90 b = 90.706 β = 90 c = 230.42 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2007-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97913 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 29.975 99.7 0.112 0.112 10.4 4.8 65127 37.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.26 96.8 0.752 0.752 1.6 3.9 4604
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 29.975 65047 3296 99.73 0.177 0.175 0.2281 0.224 0.2671 RANDOM 43.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 -0.45 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.571 r_dihedral_angle_4_deg 17.92 r_dihedral_angle_3_deg 14.733 r_scangle_it 7.379 r_dihedral_angle_1_deg 6.433 r_scbond_it 5.367 r_mcangle_it 2.761 r_mcbond_it 1.855 r_angle_refined_deg 1.572 r_angle_other_deg 0.883
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.571 r_dihedral_angle_4_deg 17.92 r_dihedral_angle_3_deg 14.733 r_scangle_it 7.379 r_dihedral_angle_1_deg 6.433 r_scbond_it 5.367 r_mcangle_it 2.761 r_mcbond_it 1.855 r_angle_refined_deg 1.572 r_angle_other_deg 0.883 r_mcbond_other 0.585 r_symmetry_vdw_other 0.284 r_nbd_refined 0.208 r_nbd_other 0.205 r_nbtor_refined 0.171 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.15 r_symmetry_vdw_refined 0.133 r_nbtor_other 0.085 r_chiral_restr 0.08 r_xyhbond_nbd_other 0.076 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8219 Nucleic Acid Atoms Solvent Atoms 282 Heterogen Atoms 434
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing