X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP727728% PEG3350, 0.3M KCL, 2mM DTT, 0.1 M MOPSO, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.8556.91

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 111.53α = 90
b = 111.53β = 90
c = 47.61γ = 120
Symmetry
Space GroupP 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 3152006-09-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.21ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12200.1567.133.544611
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.120.2564.363.34

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTION2Q6ITHROUGHOUT219.2742427225399.890.268690.266290.31298RANDOM12.274
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.010.01-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.129
r_dihedral_angle_4_deg15.651
r_dihedral_angle_3_deg15.385
r_dihedral_angle_1_deg7.9
r_scangle_it3.793
r_scbond_it2.678
r_angle_refined_deg2.043
r_mcangle_it1.631
r_mcbond_it1.084
r_nbtor_refined0.319
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.129
r_dihedral_angle_4_deg15.651
r_dihedral_angle_3_deg15.385
r_dihedral_angle_1_deg7.9
r_scangle_it3.793
r_scbond_it2.678
r_angle_refined_deg2.043
r_mcangle_it1.631
r_mcbond_it1.084
r_nbtor_refined0.319
r_nbd_refined0.23
r_symmetry_vdw_refined0.229
r_symmetry_hbond_refined0.211
r_xyhbond_nbd_refined0.183
r_chiral_restr0.153
r_bond_refined_d0.021
r_gen_planes_refined0.008
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4030
Nucleic Acid Atoms
Solvent Atoms117
Heterogen Atoms56

Software

Software
Software NamePurpose
REFMACrefinement
CNSrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing