☰ Navigation Tabs
Ensemble refinement of the protein crystal structure of an aspartoacylase from Rattus norvegicus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GU2 PDB entry 2GU2
Crystallization Crystal Properties Matthews coefficient Solvent content 2.33 47.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.581 α = 90 b = 135.778 β = 101.49 c = 54.033 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Re-refinement using ensemble model THROUGHOUT PDB entry 2GU2 1.8 40.5 58207 2955 97.1 0.138 0.138 0.151 0.191 0.2008 RANDOM 19.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 0.61 0.13 0.01
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.8 c_scangle_it 3.19 c_scbond_it 2.25 c_mcangle_it 2.13 c_angle_deg 1.5 c_mcbond_it 1.49 c_improper_angle_d 0.95 c_bond_d 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4862 Nucleic Acid Atoms Solvent Atoms 552 Heterogen Atoms 27
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CNS phasing