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Ensemble refinement of the protein crystal structure of annexin from Arabidopsis thaliana gene At1g35720
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YCN PDB entry 1YCN
Crystallization Crystal Properties Matthews coefficient Solvent content 2.87 57.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.543 α = 90 b = 96.936 β = 90 c = 226.878 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray APS-1 M SINGLE WAVELENGTH
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Re-refinement using ensemble model THROUGHOUT PDB entry 1YCN 2.508 29.81 27097 1317 93.6 0.177 0.177 0.1875 0.243 0.2527 RANDOM 42.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 11.75 -3.09 -8.66
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 18.6 c_scangle_it 3.13 c_mcangle_it 2.62 c_scbond_it 2.06 c_mcbond_it 1.52 c_angle_deg 1.1 c_improper_angle_d 0.66 c_bond_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4970 Nucleic Acid Atoms Solvent Atoms 281 Heterogen Atoms
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CNS phasing