2Q3H

The crystal structure of RhouA in the GDP-bound state.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52980.2M MgCl2; 0.1M TRIS; 25% PEG 3350, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.448.83

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.068α = 90
b = 53.6β = 118.8
c = 54.128γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDSi(111)2007-04-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1.03315SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7347.4699.60.0330.0494.32161621530
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.731.79980.490.3873.92077

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUThomology based model1.7347.462161620423110799.560.182760.184740.182760.22198RANDOM35.051
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.62-2.011.5-1.82
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.699
r_dihedral_angle_4_deg14.968
r_dihedral_angle_3_deg13.934
r_scangle_it8.106
r_dihedral_angle_1_deg7.476
r_scbond_it6.752
r_mcangle_it4.299
r_mcbond_it3.42
r_angle_refined_deg1.686
r_mcbond_other1.045
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.699
r_dihedral_angle_4_deg14.968
r_dihedral_angle_3_deg13.934
r_scangle_it8.106
r_dihedral_angle_1_deg7.476
r_scbond_it6.752
r_mcangle_it4.299
r_mcbond_it3.42
r_angle_refined_deg1.686
r_mcbond_other1.045
r_angle_other_deg0.977
r_symmetry_vdw_refined0.533
r_metal_ion_refined0.335
r_symmetry_vdw_other0.274
r_nbd_refined0.228
r_nbd_other0.197
r_nbtor_refined0.182
r_xyhbond_nbd_refined0.167
r_chiral_restr0.102
r_nbtor_other0.087
r_symmetry_hbond_refined0.082
r_bond_refined_d0.016
r_gen_planes_refined0.006
r_bond_other_d0.003
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1276
Nucleic Acid Atoms
Solvent Atoms124
Heterogen Atoms29

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing