2Q0X

Alpha/Beta hydrolase fold protein of unknown function


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62900.4 ul protein: 10.5 mg/ml, 0.4 ul crystallization buffer: 35% PEG 400, 100 mM NaCl, 100 mM MES pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties
Matthews coefficientSolvent content
2.3639.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.556α = 90
b = 63.556β = 90
c = 303.186γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDmirrors2005-06-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.97953SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2101.06299.90.060.068.17.137476-3.749.23797
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.3299.50.6120.6121.26.25299

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.2101.0237326186699.760.2080.2060.25RANDOM30.269
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.630.310.63-0.94
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.024
r_dihedral_angle_4_deg16.397
r_dihedral_angle_3_deg15.936
r_dihedral_angle_1_deg6.264
r_angle_refined_deg1.247
r_scangle_it1.145
r_angle_other_deg0.915
r_scbond_it0.752
r_mcangle_it0.642
r_mcbond_it0.374
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.024
r_dihedral_angle_4_deg16.397
r_dihedral_angle_3_deg15.936
r_dihedral_angle_1_deg6.264
r_angle_refined_deg1.247
r_scangle_it1.145
r_angle_other_deg0.915
r_scbond_it0.752
r_mcangle_it0.642
r_mcbond_it0.374
r_symmetry_vdw_other0.364
r_nbd_other0.196
r_nbd_refined0.195
r_symmetry_vdw_refined0.185
r_xyhbond_nbd_refined0.18
r_nbtor_refined0.17
r_symmetry_hbond_refined0.131
r_nbtor_other0.085
r_chiral_restr0.076
r_mcbond_other0.053
r_bond_refined_d0.012
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4533
Nucleic Acid Atoms
Solvent Atoms123
Heterogen Atoms12

Software

Software
Software NamePurpose
TRUNCATEdata reduction
SCALAdata scaling
PDB_EXTRACTdata extraction
MAR345data collection
MOSFLMdata reduction
SOLVEphasing
REFMACrefinement