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Structure of Pseudomonas Quinolone Signal Response Protein PqsE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 292 100 mM HEPES, 200 mM MgCl2, 30% PEG400, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.27 45.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.1 α = 90 b = 61.1 β = 90 c = 145.7 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.934 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 20 98.6 0.051 23.93 44378 -3 27.131
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.57 1.67 92 0.253 6.5 6857
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.57 20 44378 2236 98.82 0.122 0.12 0.169 0.1867 RANDOM 18.026
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.92 r_dihedral_angle_4_deg 17.798 r_dihedral_angle_3_deg 13.571 r_scangle_it 7.534 r_dihedral_angle_1_deg 6.317 r_scbond_it 5.802 r_mcangle_it 3.454 r_mcbond_it 3.109 r_angle_refined_deg 2.089 r_mcbond_other 1.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.92 r_dihedral_angle_4_deg 17.798 r_dihedral_angle_3_deg 13.571 r_scangle_it 7.534 r_dihedral_angle_1_deg 6.317 r_scbond_it 5.802 r_mcangle_it 3.454 r_mcbond_it 3.109 r_angle_refined_deg 2.089 r_mcbond_other 1.78 r_angle_other_deg 1.486 r_symmetry_vdw_other 0.423 r_symmetry_vdw_refined 0.304 r_symmetry_hbond_refined 0.295 r_xyhbond_nbd_other 0.255 r_nbd_other 0.238 r_nbd_refined 0.234 r_xyhbond_nbd_refined 0.21 r_nbtor_refined 0.181 r_chiral_restr 0.145 r_nbtor_other 0.087 r_bond_refined_d 0.027 r_metal_ion_refined 0.014 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2458 Nucleic Acid Atoms Solvent Atoms 346 Heterogen Atoms 11
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SHELXD phasing