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Crystal Structure of Protein kinase PknG from Mycobacterium tuberculosis in Complex with Tetrahydrobenzothiophene AX20017
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.8 293 0.1M Sodium Citrate, 0.2M Sodium Chloride, 1M Ammonium phosphate, 0.01M Cadmium Chloride , pH 5.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.56 65.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.553 α = 90 b = 122.553 β = 90 c = 243.749 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors 2006-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.008503 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 106 99.9 80540 80540 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.42 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.4 106 76493 76493 4045 99.91 0.18555 0.18555 0.1831 0.1793 0.23339 0.228 RANDOM 47.621
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.07 -0.13 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.651 r_dihedral_angle_4_deg 17.766 r_dihedral_angle_3_deg 16.866 r_scangle_it 7.726 r_scbond_it 5.787 r_dihedral_angle_1_deg 5.771 r_mcangle_it 3.482 r_mcbond_it 2.191 r_angle_refined_deg 1.394 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.651 r_dihedral_angle_4_deg 17.766 r_dihedral_angle_3_deg 16.866 r_scangle_it 7.726 r_scbond_it 5.787 r_dihedral_angle_1_deg 5.771 r_mcangle_it 3.482 r_mcbond_it 2.191 r_angle_refined_deg 1.394 r_nbtor_refined 0.302 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.171 r_xyhbond_nbd_refined 0.156 r_symmetry_hbond_refined 0.11 r_chiral_restr 0.09 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9975 Nucleic Acid Atoms Solvent Atoms 296 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data reduction XSCALE data scaling SHARP phasing