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Crystal Structure of HIV-1 CA146 A92E Psuedo Cell
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other HIV-1 CA146
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 294 24% PEG 4500, 0.60 M MgCl2, 100 mM Tris-HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.91 35.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.225 α = 83.01 b = 48.208 β = 71.28 c = 58.928 γ = 87.43
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.1000 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 50 91 0.056 14 84854 77217 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.5 61.6 0.294 2 5216
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT CA146 1.45 30.03 2 84854 77215 3881 90.72 0.173 0.17 0.1683 0.216 0.2132 RANDOM 20.022
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 -0.03 -0.04 0.3 0.08 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.248 r_dihedral_angle_4_deg 16.235 r_dihedral_angle_3_deg 15.65 r_sphericity_free 8.153 r_dihedral_angle_1_deg 5.663 r_sphericity_bonded 5.36 r_scangle_it 5.133 r_scbond_it 3.537 r_mcangle_it 2.575 r_rigid_bond_restr 2.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.248 r_dihedral_angle_4_deg 16.235 r_dihedral_angle_3_deg 15.65 r_sphericity_free 8.153 r_dihedral_angle_1_deg 5.663 r_sphericity_bonded 5.36 r_scangle_it 5.133 r_scbond_it 3.537 r_mcangle_it 2.575 r_rigid_bond_restr 2.083 r_mcbond_it 1.801 r_angle_refined_deg 1.664 r_nbtor_refined 0.312 r_symmetry_hbond_refined 0.284 r_symmetry_vdw_refined 0.271 r_xyhbond_nbd_refined 0.264 r_nbd_refined 0.238 r_chiral_restr 0.11 r_bond_refined_d 0.017 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4828 Nucleic Acid Atoms Solvent Atoms 533 Heterogen Atoms 4
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection