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Crystal structure of chorismate mutase / prephenate dehydrogenase (tyrA) (1574749) from Haemophilus influenzae RD at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 NANODROP, 0.04M Potassium dihydrogen phosphate, 20.0% Glycerol, 16.0% PEG 8000, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.98 58.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.79 α = 90 b = 127.79 β = 90 c = 100.62 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-04-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97920 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.696 99.7 0.062 12.89 7.29 56593 32.83
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 99.3 0.507 2.56 9589
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 29.696 56541 2870 99.75 0.163 0.163 0.161 0.1727 0.194 0.201 RANDOM 31.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 0.36 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.471 r_dihedral_angle_4_deg 20.377 r_dihedral_angle_3_deg 12.801 r_scangle_it 6.309 r_dihedral_angle_1_deg 5.621 r_scbond_it 4.926 r_mcangle_it 2.961 r_mcbond_it 2.189 r_angle_refined_deg 1.61 r_angle_other_deg 0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.471 r_dihedral_angle_4_deg 20.377 r_dihedral_angle_3_deg 12.801 r_scangle_it 6.309 r_dihedral_angle_1_deg 5.621 r_scbond_it 4.926 r_mcangle_it 2.961 r_mcbond_it 2.189 r_angle_refined_deg 1.61 r_angle_other_deg 0.9 r_mcbond_other 0.586 r_symmetry_vdw_other 0.225 r_nbd_refined 0.206 r_symmetry_hbond_refined 0.187 r_nbtor_refined 0.179 r_nbd_other 0.177 r_xyhbond_nbd_refined 0.149 r_symmetry_vdw_refined 0.104 r_chiral_restr 0.094 r_nbtor_other 0.085 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4427 Nucleic Acid Atoms Solvent Atoms 393 Heterogen Atoms 114
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing