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Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1M HEPES, 10% v/v isopropanol with 6mg/ml coelenterazine, 15% w/v PEG 3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.329 α = 90 b = 74.473 β = 103.45 c = 89.249 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 55608
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 50 55608 2915 96.44 0.18898 0.18755 0.192 0.21597 0.2198 RANDOM 21.443
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.09 -0.31 -0.66 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.266 r_dihedral_angle_4_deg 14.747 r_dihedral_angle_3_deg 13.039 r_dihedral_angle_1_deg 5.624 r_scangle_it 1.928 r_scbond_it 1.331 r_angle_refined_deg 1.194 r_angle_other_deg 0.86 r_mcangle_it 0.708 r_mcbond_it 0.642
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.266 r_dihedral_angle_4_deg 14.747 r_dihedral_angle_3_deg 13.039 r_dihedral_angle_1_deg 5.624 r_scangle_it 1.928 r_scbond_it 1.331 r_angle_refined_deg 1.194 r_angle_other_deg 0.86 r_mcangle_it 0.708 r_mcbond_it 0.642 r_nbd_refined 0.209 r_nbd_other 0.193 r_nbtor_refined 0.184 r_symmetry_hbond_refined 0.148 r_symmetry_vdw_refined 0.136 r_xyhbond_nbd_refined 0.135 r_symmetry_vdw_other 0.124 r_mcbond_other 0.12 r_nbtor_other 0.083 r_chiral_restr 0.074 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5006 Nucleic Acid Atoms Solvent Atoms 453 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement