2PSF

Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.42930.4M sodium acetate, 20% w/v PEG 3350, 1.8mM n-Decyl-beta-D-thiomaltoside, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.141.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.178α = 90
b = 82.279β = 90
c = 90.379γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray1002005-09-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.2ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.450111557

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.450111557587998.320.173660.172570.19406RANDOM15.561
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.06-0.280.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.561
r_dihedral_angle_4_deg14.842
r_dihedral_angle_3_deg12.162
r_dihedral_angle_1_deg5.522
r_scangle_it2.159
r_scbond_it1.584
r_angle_refined_deg1.209
r_angle_other_deg0.882
r_mcangle_it0.807
r_mcbond_it0.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.561
r_dihedral_angle_4_deg14.842
r_dihedral_angle_3_deg12.162
r_dihedral_angle_1_deg5.522
r_scangle_it2.159
r_scbond_it1.584
r_angle_refined_deg1.209
r_angle_other_deg0.882
r_mcangle_it0.807
r_mcbond_it0.71
r_nbd_refined0.213
r_nbd_other0.193
r_symmetry_vdw_other0.186
r_nbtor_refined0.184
r_symmetry_vdw_refined0.126
r_mcbond_other0.121
r_xyhbond_nbd_refined0.113
r_symmetry_hbond_refined0.107
r_nbtor_other0.083
r_chiral_restr0.078
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4983
Nucleic Acid Atoms
Solvent Atoms790
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement