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Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 0.15 KSCN, 15% w/v PEG 6000, 0.1 M Tris-HCl, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.67 53.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.443 α = 90 b = 119.443 β = 90 c = 48.048 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2005-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 11477
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 43.56 11477 604 89.22 0.19344 0.1913 0.1933 0.23248 0.2356 RANDOM 29.204
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.53 0.26 0.53 -0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.875 r_dihedral_angle_4_deg 17.54 r_dihedral_angle_3_deg 16.591 r_dihedral_angle_1_deg 6.744 r_scangle_it 2.425 r_scbond_it 1.662 r_angle_refined_deg 1.588 r_mcangle_it 1.061 r_angle_other_deg 0.957 r_mcbond_it 0.836
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.875 r_dihedral_angle_4_deg 17.54 r_dihedral_angle_3_deg 16.591 r_dihedral_angle_1_deg 6.744 r_scangle_it 2.425 r_scbond_it 1.662 r_angle_refined_deg 1.588 r_mcangle_it 1.061 r_angle_other_deg 0.957 r_mcbond_it 0.836 r_symmetry_vdw_other 0.339 r_nbd_refined 0.228 r_nbd_other 0.205 r_nbtor_refined 0.194 r_xyhbond_nbd_refined 0.19 r_symmetry_vdw_refined 0.147 r_mcbond_other 0.139 r_symmetry_hbond_refined 0.135 r_nbtor_other 0.093 r_chiral_restr 0.089 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2502 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement