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Human Poly(ADP-Ribose) Polymerase 12, Catalytic fragment in complex with an inhibitor 3-Aminobenzoic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.3 298 9% PEG 6000, 100mM Na Citrate, 2% DMSO, pH 4.3, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 4.30
Crystal Properties Matthews coefficient Solvent content 3.3 62.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 206.59 α = 90 b = 206.59 β = 90 c = 84.73 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2007-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 1 0.071 0.083 12.8 3.8 90498
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.3 99.1 0.432 0.335 3.5 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 19.6 88683 88683 1810 100 0.19922 0.19831 0.1993 0.2444 0.2455 RANDOM 46.866
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.839 r_dihedral_angle_4_deg 24.309 r_dihedral_angle_3_deg 15.792 r_dihedral_angle_1_deg 6.909 r_scangle_it 2.604 r_scbond_it 1.822 r_angle_refined_deg 1.585 r_mcangle_it 1.253 r_angle_other_deg 0.99 r_mcbond_it 0.969
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.839 r_dihedral_angle_4_deg 24.309 r_dihedral_angle_3_deg 15.792 r_dihedral_angle_1_deg 6.909 r_scangle_it 2.604 r_scbond_it 1.822 r_angle_refined_deg 1.585 r_mcangle_it 1.253 r_angle_other_deg 0.99 r_mcbond_it 0.969 r_symmetry_vdw_refined 0.541 r_nbd_refined 0.303 r_mcbond_other 0.236 r_symmetry_hbond_refined 0.229 r_xyhbond_nbd_refined 0.212 r_symmetry_vdw_other 0.208 r_nbtor_refined 0.197 r_nbd_other 0.178 r_chiral_restr 0.134 r_nbtor_other 0.093 r_xyhbond_nbd_other 0.033 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8995 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 138
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SOLVE phasing