☰ Navigation Tabs
Crystal structure of thioredoxin-2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 295 28-32% PEG400, 10 mM zinc sulfate, 50 mM ADA , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.6 52.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.784 α = 90 b = 68.184 β = 112.04 c = 64.124 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2007-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 50 96.2 0.066 0.059 10.2 2.9 24706 23.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.92 50 25672 24706 1194 96.3 0.205 0.205 0.2045 0.219 0.2188 RANDOM 24.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.55 -3.545 3.01 0.54
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.5 c_scbond_it 1.689 c_mcangle_it 1.583 c_mcbond_it 1.013 c_bond_d c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.5 c_scbond_it 1.689 c_mcangle_it 1.583 c_mcbond_it 1.013 c_bond_d c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2134 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 3
Software Software Software Name Purpose HKL-3000 data collection SHELXS phasing CNS refinement HKL-3000 data reduction HKL-3000 data scaling