Experiment: 2PN7

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	3.9	277	2 micro L of Selenomethionine containing GGCT (15mg/ml in 20 mM Tris/HCL 0,1mM dithiothreitol pH8.0) was mixed with equal volumes of gamma-glu-glu dipeptide (40mM) and well solution. The well contained 1ml of a solution comprising PEG 4000 (22.5% w/v), 100mM sodium formate buffer pH3.9, 200mM ammonium acetate. , VAPOR DIFFUSION, HANGING DROP, temperature 277K

Crystal Properties
Matthews coefficient	Solvent content
2.08	40.75

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 35.181	α = 90
b = 98.668	β = 90
c = 100.659	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315	19-ID beamline optics	2006-11-25	M	MAD

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 19-ID	0.97934, 0.97948	APS	19-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.4	50	98.3	0.133	0.486	11.14	6.1	14334	13898	-1	-1	40.121

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.4	2.49	90.2		0.486	0.486	2.09	3.3	1208

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Cut-off Sigma (I)	Cut-off Sigma (F)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MAD	THROUGHOUT	2.41	50	-1	-1	14334	13023	687	96.62	0.19256	0.19256	0.18954	0.25089	RANDOM	45.347

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.99			1.24		-0.25

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.747
r_dihedral_angle_3_deg	17.015
r_dihedral_angle_4_deg	11.356
r_scangle_it	7.015
r_dihedral_angle_1_deg	6.605
r_scbond_it	4.923
r_mcangle_it	3.356
r_mcbond_it	2.043
r_angle_refined_deg	1.506
r_nbtor_refined	0.304

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.747
r_dihedral_angle_3_deg	17.015
r_dihedral_angle_4_deg	11.356
r_scangle_it	7.015
r_dihedral_angle_1_deg	6.605
r_scbond_it	4.923
r_mcangle_it	3.356
r_mcbond_it	2.043
r_angle_refined_deg	1.506
r_nbtor_refined	0.304
r_nbd_refined	0.207
r_xyhbond_nbd_refined	0.172
r_symmetry_vdw_refined	0.151
r_chiral_restr	0.101
r_symmetry_hbond_refined	0.096
r_bond_refined_d	0.015
r_gen_planes_refined	0.005

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2681
Nucleic Acid Atoms
Solvent Atoms	34
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-3000	data collection
HKL-3000	data reduction
HKL-3000	data scaling
MLPHARE	phasing

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.