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Crystal Structure of Hepatitis C Virus IRES Subdomain IIa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6.2 290 5% MPD, 5mM MgSO4, 12.5mM NaCl, 50mM KCl, 25mM Cacodylate equilibrated with 65%MPD, pH 6.2, EVAPORATION, temperature 290.0K
Crystal Properties Matthews coefficient Solvent content 2.55 51.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.945 α = 90 b = 48.945 β = 90 c = 120.942 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MAR CCD 165 mm mirrors 2004-10-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.9203, 0.9197, 0.90686 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 93.7 0.081 27.5 11.2 3650 3420 55.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 3 75.1 0.345 4.6 8.1 253
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.9 45 3452 3202 143 92.74 0.23204 0.22969 0.2288 0.2294 0.28263 0.2773 RANDOM 44.297
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.08 -2.08 4.16
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 2.006 r_angle_refined_deg 1.885 r_scbond_it 1.177 r_symmetry_hbond_refined 0.305 r_nbtor_refined 0.299 r_nbd_refined 0.195 r_xyhbond_nbd_refined 0.193 r_symmetry_vdw_refined 0.172 r_chiral_restr 0.071 r_bond_refined_d 0.012
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 2.006 r_angle_refined_deg 1.885 r_scbond_it 1.177 r_symmetry_hbond_refined 0.305 r_nbtor_refined 0.299 r_nbd_refined 0.195 r_xyhbond_nbd_refined 0.193 r_symmetry_vdw_refined 0.172 r_chiral_restr 0.071 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 930 Solvent Atoms Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement APS data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing