2PMY | pdb_00002pmy

EF-hand domain of human RASEF

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	5	291	0.6M Ammonium sulfate, 0.1M Sodium cacodylate, 0.01M Magnesium chloride, pH 5.0, VAPOR DIFFUSION, temperature 291K

Crystal Properties
Matthews coefficient	Solvent content
2.31	46.74

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 61.259	α = 90
b = 61.259	β = 90
c = 101.598	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	IMAGE PLATE	RIGAKU RAXIS		2007-01-17	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU FR-E+ DW	1.5418

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.2	30	100	0.137	8	14.9		18809

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.2	2.28		100		14.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	2.3	30	9095	494	99.89	0.23	0.2286	0.24	0.2634	0.26	Thin shells	28.406

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.354			0.354		-0.708

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	25.005
r_dihedral_angle_4_deg	16.111
r_dihedral_angle_3_deg	12.226
r_dihedral_angle_1_deg	4.861
r_angle_other_deg	4.306
r_scangle_it	3.757
r_mcangle_it	3.685
r_scbond_it	2.542
r_mcbond_it	2.377
r_angle_refined_deg	1.235
r_symmetry_vdw_other	0.356
r_nbd_refined	0.313
r_metal_ion_refined	0.29
r_symmetry_vdw_refined	0.242
r_nbd_other	0.223
r_nbtor_refined	0.17
r_xyhbond_nbd_refined	0.159
r_symmetry_hbond_refined	0.126
r_nbtor_other	0.1
r_chiral_restr	0.071
r_bond_refined_d	0.013
r_gen_planes_other	0.008
r_gen_planes_refined	0.005
r_bond_other_d
r_mcbond_other

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1104
Nucleic Acid Atoms
Solvent Atoms	15
Heterogen Atoms	13

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction