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Crystal structure of a protein of unknown function from Methanobacterium thermoautotrophicum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 294 55% MPD, pH 7.0, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.99 38.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.37 α = 90 b = 94.936 β = 90 c = 46.258 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.32 47.468 98.7 0.088 0.088 14.8 7.7 19764 19764 11.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.32 1.39 92.4 0.439 0.439 3.8 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.32 20 19747 19747 1014 99.34 0.17545 0.17459 0.178 0.1913 0.1893 RANDOM 17.23
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.23 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.098 r_dihedral_angle_4_deg 18.276 r_dihedral_angle_3_deg 12.829 r_dihedral_angle_1_deg 4.109 r_scangle_it 2.924 r_scbond_it 2.266 r_sphericity_free 2.001 r_sphericity_bonded 1.927 r_rigid_bond_restr 1.523 r_mcangle_it 1.337
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.098 r_dihedral_angle_4_deg 18.276 r_dihedral_angle_3_deg 12.829 r_dihedral_angle_1_deg 4.109 r_scangle_it 2.924 r_scbond_it 2.266 r_sphericity_free 2.001 r_sphericity_bonded 1.927 r_rigid_bond_restr 1.523 r_mcangle_it 1.337 r_angle_refined_deg 1.03 r_mcbond_it 0.831 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.239 r_nbd_refined 0.197 r_xyhbond_nbd_refined 0.118 r_symmetry_hbond_refined 0.107 r_chiral_restr 0.075 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 626 Nucleic Acid Atoms Solvent Atoms 66 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction CCP4 data scaling SHELXCD phasing SHELXD phasing SHELXE model building