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Protein cgd2_2020 from Cryptosporidium parvum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.5 293 21% PEG3350, 0.3 M NaBr, 0.1 M MES pH 5.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.31 46.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.527 α = 69.29 b = 68.522 β = 75.14 c = 79.57 γ = 93.73
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-06-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.97953, 0.97967 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 98.2 0.07 0.07 20.25 3.9 40584 40584 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 97.5 0.283 0.283 4.55 4 3974
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 20 38493 38493 2091 98.15 0.22279 0.22279 0.21968 0.2236 0.28024 0.2749 RANDOM 28.229
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -0.07 0.17 -0.39 0.31 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.027 r_dihedral_angle_4_deg 22.562 r_dihedral_angle_3_deg 21.164 r_dihedral_angle_1_deg 14.555 r_scangle_it 2.845 r_scbond_it 1.937 r_angle_refined_deg 1.754 r_mcangle_it 1.203 r_mcbond_it 0.702 r_symmetry_vdw_refined 0.334
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.027 r_dihedral_angle_4_deg 22.562 r_dihedral_angle_3_deg 21.164 r_dihedral_angle_1_deg 14.555 r_scangle_it 2.845 r_scbond_it 1.937 r_angle_refined_deg 1.754 r_mcangle_it 1.203 r_mcbond_it 0.702 r_symmetry_vdw_refined 0.334 r_nbtor_refined 0.318 r_symmetry_hbond_refined 0.275 r_nbd_refined 0.235 r_xyhbond_nbd_refined 0.206 r_chiral_restr 0.15 r_bond_refined_d 0.021 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6639 Nucleic Acid Atoms Solvent Atoms 428 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing O model building Coot model building CCP4 phasing ARP/wARP model building