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Crystal structure of a lectin from Canavalia gladiata seeds (CGL) in complex with man1-4man-OMe
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 4.5-6.5 M sodium formate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.932 α = 90 b = 68.932 β = 90 c = 160.436 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2006-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 40.096 0.068 6.8 8.8 10.2 56114
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.98 0.233 23.3 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.98 39.84 56114 2983 99.57 0.18453 0.18175 0.1837 0.2363 0.2373 RANDOM 18.981
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.761 r_dihedral_angle_4_deg 18.809 r_dihedral_angle_3_deg 17.635 r_dihedral_angle_1_deg 9.103 r_scangle_it 3.895 r_scbond_it 2.739 r_angle_refined_deg 2.128 r_mcangle_it 1.825 r_mcbond_it 1.12 r_symmetry_hbond_refined 0.355
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.761 r_dihedral_angle_4_deg 18.809 r_dihedral_angle_3_deg 17.635 r_dihedral_angle_1_deg 9.103 r_scangle_it 3.895 r_scbond_it 2.739 r_angle_refined_deg 2.128 r_mcangle_it 1.825 r_mcbond_it 1.12 r_symmetry_hbond_refined 0.355 r_nbtor_refined 0.322 r_symmetry_vdw_refined 0.289 r_nbd_refined 0.241 r_xyhbond_nbd_refined 0.185 r_metal_ion_refined 0.167 r_chiral_restr 0.158 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7122 Nucleic Acid Atoms Solvent Atoms 471 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement