☰ Navigation Tabs
Crystal structure of the C-terminal lobe of bovine lactoferrin complexed with O-alpha-D-Glucopyranosyl-(1 3)-alpha-D-fructofuranosyl- (2 1)- alpha-D-glucopyranoside at 1.93 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2O1L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 298 0.1M HEPES, 0.2M ZnSO4, 20% PEG monomethyl ether, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.66 53.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.155 α = 90 b = 50.425 β = 107.7 c = 65.883 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 292 IMAGE PLATE MAR scanner 345 mm plate mirror 2007-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.54132
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 63.25 94.1 28172 26745
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 2 83
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2O1L 1.93 63.25 28172 26745 1413 94.08 0.17441 0.17032 0.21652 RANDOM 33.326
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 -1.43 -0.85 -0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.43 r_scangle_it 4.857 r_dihedral_angle_1_deg 4.691 r_scbond_it 2.896 r_mcangle_it 2.126 r_angle_refined_deg 1.689 r_mcbond_it 1.133 r_symmetry_vdw_refined 0.262 r_nbd_refined 0.232 r_symmetry_hbond_refined 0.176
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.43 r_scangle_it 4.857 r_dihedral_angle_1_deg 4.691 r_scbond_it 2.896 r_mcangle_it 2.126 r_angle_refined_deg 1.689 r_mcbond_it 1.133 r_symmetry_vdw_refined 0.262 r_nbd_refined 0.232 r_symmetry_hbond_refined 0.176 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.117 r_metal_ion_refined 0.061 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2594 Nucleic Acid Atoms Solvent Atoms 324 Heterogen Atoms 149
Software Software Software Name Purpose REFMAC refinement MAR345 data collection AUTOMAR data reduction SCALEPACK data scaling AMoRE phasing