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Crystal structure of a conserved protein from locus EF_2437 in Enterococcus faecalis with an unknown function
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 289 0.1M Bis-Tris pH 6.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.78 55.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.244 α = 90 b = 86.244 β = 90 c = 109.764 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97935 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 33.9 95.2 0.091 11.3 10.5 23984 23984 -3 57.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.23 74 0.384 2.4 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.15 33.9 22760 22760 1224 95.19 0.18543 0.18543 0.18295 0.1824 0.23345 0.2336 RANDOM 57.231
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.22 -1.11 -2.22 3.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.946 r_dihedral_angle_4_deg 17.937 r_dihedral_angle_3_deg 17.092 r_dihedral_angle_1_deg 5.889 r_scangle_it 3.655 r_scbond_it 2.363 r_angle_refined_deg 1.48 r_mcangle_it 1.355 r_mcbond_it 0.722 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.946 r_dihedral_angle_4_deg 17.937 r_dihedral_angle_3_deg 17.092 r_dihedral_angle_1_deg 5.889 r_scangle_it 3.655 r_scbond_it 2.363 r_angle_refined_deg 1.48 r_mcangle_it 1.355 r_mcbond_it 0.722 r_nbtor_refined 0.306 r_nbd_refined 0.208 r_symmetry_hbond_refined 0.166 r_symmetry_vdw_refined 0.157 r_xyhbond_nbd_refined 0.135 r_metal_ion_refined 0.1 r_chiral_restr 0.096 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2781 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling SHELXD phasing SHELXE model building autoSHARP phasing ARP/wARP model building CCP4 phasing Coot model building