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Structure of an early-microsecond photolyzed state of CO-bjFixLH, dark state
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 4M NaCl, 50mM CAPSO, 1% PEI, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.54 65.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.5 α = 90 b = 128.5 β = 90 c = 58.4 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 neutron 287 CCD MAR CCD 165 mm 2002-04-17 L LAUE 2 1 neutron 287 CCD MAR CCD 165 mm 2002-08-12 L LAUE 3 1 neutron 287 CCD MAR CCD 165 mm 2002-12-13 L LAUE
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.8-1.5 APS 14-ID-B 2 SYNCHROTRON APS BEAMLINE 14-ID-B 0.8-1.5 APS 14-ID-B 3 SYNCHROTRON APS BEAMLINE 14-ID-B 0.8-1.5 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 2.5 34.1 6485 6352
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.55
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 34.1 6352 300 97.05 0.216 0.213 0.2229 0.291 0.3182 RANDOM 87.389
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.02 -0.04 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.955 r_dihedral_angle_4_deg 19.447 r_dihedral_angle_3_deg 17.003 r_dihedral_angle_1_deg 6.089 r_scangle_it 5.065 r_scbond_it 2.896 r_mcangle_it 1.892 r_angle_refined_deg 1.608 r_mcbond_it 0.942 r_nbtor_refined 0.324
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.955 r_dihedral_angle_4_deg 19.447 r_dihedral_angle_3_deg 17.003 r_dihedral_angle_1_deg 6.089 r_scangle_it 5.065 r_scbond_it 2.896 r_mcangle_it 1.892 r_angle_refined_deg 1.608 r_mcbond_it 0.942 r_nbtor_refined 0.324 r_nbd_refined 0.266 r_symmetry_hbond_refined 0.247 r_xyhbond_nbd_refined 0.188 r_symmetry_vdw_refined 0.152 r_chiral_restr 0.089 r_bond_refined_d 0.016 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 920 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction