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ENDOGLUCANASE I COMPLEXED WITH CELLOBIOSE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other NATIVE STRUCTURE (2 MOLECULES IN ASYMMETRIC UNIT)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 22 % PEG 8K, 0.2 M MAGNESIUM CHLORIDE, PH 6.5 FOR 0.1 M MOPS. METHOD: HANGING DROP VAPOR DIFFUSION THE NATIVE CRYSTALS WERE SOAKED FOR 1 HOUR IN STABILIZING SOLUTION CONTAINING 20 MM OF CELLOBIOSE., vapor diffusion - hanging drop
Crystal Properties Matthews coefficient Solvent content 2.09 40.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.93 α = 90 b = 78.31 β = 96.98 c = 142.47 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE RIGAKU RAXIS IIC 1995-08-23 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 86.6 0.077 9.6 1.9 57194 31.27
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 59.9 0.27 2.29 1.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R NATIVE STRUCTURE (2 MOLECULES IN ASYMMETRIC UNIT) 2.3 15 54116 2887 86.4 0.209 0.1954 RANDOM 29.73
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 21.9 p_staggered_tor 20.8 p_scangle_it 5.685 p_scbond_it 4.393 p_mcangle_it 2.828 p_planar_tor 2.3 p_mcbond_it 1.841 p_multtor_nbd 0.25 p_xyhbond_nbd 0.196 p_singtor_nbd 0.183
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 21.9 p_staggered_tor 20.8 p_scangle_it 5.685 p_scbond_it 4.393 p_mcangle_it 2.828 p_planar_tor 2.3 p_mcbond_it 1.841 p_multtor_nbd 0.25 p_xyhbond_nbd 0.196 p_singtor_nbd 0.183 p_chiral_restr 0.126 p_angle_d 0.037 p_planar_d 0.035 p_bond_d 0.013 p_angle_deg p_hb_or_metal_coord p_plane_restr p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12088 Nucleic Acid Atoms Solvent Atoms 1101 Heterogen Atoms 204
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement