☰ Navigation Tabs
Crystal structure of CD5_DIII
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.4 289 10mM Hepes, 300mM Na,Cl pH7.4, VAPOR DIFFUSION, temperature 289K
Crystal Properties Matthews coefficient Solvent content 4.06 69.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.161 α = 90 b = 74.161 β = 90 c = 128.99 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARMOSAIC 225 mm CCD dinamically bendable mirror 2006-08-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.97 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 40 99.6 0.07 6.9 8.9 13033 12350 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.65 98.9 0.34 2.1 9.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 40.69 12350 631 99.6 0.21842 0.21638 0.2108 0.25863 0.2551 RANDOM 24.904
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.02 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.536 r_dihedral_angle_4_deg 24.979 r_dihedral_angle_3_deg 20.622 r_dihedral_angle_1_deg 9.829 r_scangle_it 5.694 r_scbond_it 3.719 r_angle_refined_deg 2.409 r_mcangle_it 2.385 r_mcbond_it 1.447 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.536 r_dihedral_angle_4_deg 24.979 r_dihedral_angle_3_deg 20.622 r_dihedral_angle_1_deg 9.829 r_scangle_it 5.694 r_scbond_it 3.719 r_angle_refined_deg 2.409 r_mcangle_it 2.385 r_mcbond_it 1.447 r_nbtor_refined 0.318 r_nbd_refined 0.251 r_symmetry_vdw_refined 0.224 r_chiral_restr 0.187 r_xyhbond_nbd_refined 0.167 r_symmetry_hbond_refined 0.127 r_bond_refined_d 0.025 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1452 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection DENZO data reduction SCALEPACK data scaling SnB phasing