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High Pressure Cryocooling of Capillary Sample Cryoprotection and Diffraction Phasing at Long Wavelengths
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LXZ PDB ENTRY 1lxz
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Crystallized in a polycarbonate capillary by vapor diffusion 7 293 0.9 M sodium potassium tartrate, pH 7.0, Crystallized in a polycarbonate capillary by vapor diffusion , temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.85 56.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.968 α = 90 b = 57.968 β = 90 c = 150.716 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 210 2006-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F2 1.7463 CHESS F2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 99.4 0.089 32 12.3 20909 17.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 93.9 0.175 5 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1lxz 1.9 28.99 19833 1069 99.7 0.17764 0.17556 0.1743 0.21623 0.2166 RANDOM 17.117
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.514 r_dihedral_angle_4_deg 20.232 r_dihedral_angle_3_deg 12.226 r_dihedral_angle_1_deg 6.447 r_scangle_it 3.706 r_scbond_it 2.327 r_mcangle_it 1.379 r_angle_refined_deg 1.322 r_mcbond_it 0.831 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.514 r_dihedral_angle_4_deg 20.232 r_dihedral_angle_3_deg 12.226 r_dihedral_angle_1_deg 6.447 r_scangle_it 3.706 r_scbond_it 2.327 r_mcangle_it 1.379 r_angle_refined_deg 1.322 r_mcbond_it 0.831 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.221 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.095 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1550 Nucleic Acid Atoms Solvent Atoms 401 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing