2OOR

Structure of transhydrogenase (dI.NAD+)2(dIII.H2NADPH)1 asymmetric complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5277100mM Mes, 16% PEG 4K, 10% glycerol, 50mM ammonium sulphate , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.7755.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.194α = 90
b = 74.451β = 90
c = 204.844γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDMAR CCD 130 mm2004-07-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-30.93300ESRFID14-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.32102.62991.40.0530.0538.74.244362
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.322.45690.3170.3172.33.64726

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1U2D2.32102.644314253090.980.2490.2470.275RANDOM52.352
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.54-0.25-1.29
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.461
r_dihedral_angle_4_deg16.154
r_dihedral_angle_3_deg15.832
r_dihedral_angle_1_deg5.845
r_angle_refined_deg1.337
r_mcangle_it1.326
r_mcbond_it1.127
r_scangle_it1.091
r_angle_other_deg0.982
r_scbond_it0.705
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.461
r_dihedral_angle_4_deg16.154
r_dihedral_angle_3_deg15.832
r_dihedral_angle_1_deg5.845
r_angle_refined_deg1.337
r_mcangle_it1.326
r_mcbond_it1.127
r_scangle_it1.091
r_angle_other_deg0.982
r_scbond_it0.705
r_xyhbond_nbd_refined0.168
r_mcbond_other0.152
r_nbtor_refined0.146
r_nbd_refined0.14
r_nbd_other0.129
r_symmetry_vdw_other0.102
r_symmetry_hbond_refined0.09
r_nbtor_other0.079
r_chiral_restr0.068
r_symmetry_vdw_refined0.055
r_xyhbond_nbd_other0.027
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6756
Nucleic Acid Atoms
Solvent Atoms91
Heterogen Atoms134

Software

Software
Software NamePurpose
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
CCP4data scaling