2OMJ | pdb_00002omj

solution structure of LARG PDZ domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1CBCANH1.3mM LARG PDZ domain, 15N, 13C-labeled, 5mM EDTA, 1mM EDTA50mM phosphate buffer, 90% H2O, 10% D2O50mM phosphate buffer, 50mM NaCl6.01 atm293
2CBCA(CO)NH1.3mM LARG PDZ domain, 15N, 13C-labeled, 5mM EDTA, 1mM EDTA50mM phosphate buffer, 90% H2O, 10% D2O50mM phosphate buffer, 50mM NaCl6.01 atm293
3HBHA(CBCACO)NH1.3mM LARG PDZ domain, 15N, 13C-labeled, 5mM EDTA, 1mM EDTA50mM phosphate buffer, 90% H2O, 10% D2O50mM phosphate buffer, 50mM NaCl6.01 atm293
4HNCO1.3mM LARG PDZ domain, 15N, 13C-labeled, 5mM EDTA, 1mM EDTA50mM phosphate buffer, 90% H2O, 10% D2O50mM phosphate buffer, 50mM NaCl6.01 atm293
53D_13C-separated_NOESY1.3mM LARG PDZ domain, 15N, 13C-labeled, 5mM EDTA, 1mM EDTA50mM phosphate buffer, 99.9% D2O
6HCCH-TOCSY1.3mM LARG PDZ domain, 15N, 13C-labeled, 5mM EDTA, 1mM EDTA50mM phosphate buffer, 99.9% D2O
7HCCH-COSY1.3mM LARG PDZ domain, 15N, 13C-labeled, 5mM EDTA, 1mM EDTA50mM phosphate buffer, 99.9% D2O
83D_15N-separated_NOESY1.3mM LARG PDZ domain, 15N, 13C-labeled, 5mM EDTA, 1mM EDTA50mM phosphate buffer, 90% H2O, 10% D2O50mM phosphate buffer, 50mM NaCl6.01 atm293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDMX500
2BrukerDMX600
NMR Refinement
MethodDetailsSoftware
Distance geometry, simulated annealing, molecular dynamics, torsion angle dynamicsA total of 1145 experimental distance restraint derived from NOE and hydrogen bonds and 82 dihedral angle restraints were utilized in the structure calculationscns1.1
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutioncns1.1A.T.Brunger
2processingCsi 1.0David S. Wishart
3data analysisSparky 3T.D.Goddard and D.G.Kneller
4processingNmrpipe 2.2F.Delaglio
5data analysisMolmol 2k.2Koradi
6refinementcns1.1A.T.Brunger