☰ Navigation Tabs
Structural Insight Into the Transglycosylation Step Of Bacterial Cell Wall Biosynthesis : Apoenzyme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 291 100mM hepes, 0.2M KCl, 4% PEG 8000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.04 59.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.495 α = 90 b = 249.891 β = 90 c = 103.164 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9795 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 24.6 99.9 0.132 0.132 4.9 4.2 20671
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.06 99.9 0.431 0.431 1.8 4.3 2962
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.9 24.6 20671 20620 1043 99.84 0.191 0.194 0.191 0.2386 0.246 0.2852 RANDOM 19.412
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.26 0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.094 r_dihedral_angle_4_deg 22.244 r_dihedral_angle_3_deg 19.472 r_dihedral_angle_1_deg 7.29 r_scangle_it 1.992 r_angle_refined_deg 1.507 r_scbond_it 1.266 r_angle_other_deg 0.957 r_mcangle_it 0.841 r_mcbond_it 0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.094 r_dihedral_angle_4_deg 22.244 r_dihedral_angle_3_deg 19.472 r_dihedral_angle_1_deg 7.29 r_scangle_it 1.992 r_angle_refined_deg 1.507 r_scbond_it 1.266 r_angle_other_deg 0.957 r_mcangle_it 0.841 r_mcbond_it 0.71 r_nbd_refined 0.24 r_symmetry_vdw_other 0.222 r_nbd_other 0.188 r_nbtor_refined 0.188 r_symmetry_vdw_refined 0.182 r_xyhbond_nbd_refined 0.18 r_symmetry_hbond_refined 0.118 r_nbtor_other 0.091 r_mcbond_other 0.088 r_chiral_restr 0.081 r_bond_refined_d 0.015 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4777 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 4
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction CCP4 data scaling SOLVE phasing