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Crystal structure of human OLA1 in complex with AMPPCP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JAL PDB Entries 1JAL and 1NI3 experimental model PDB 1NI3 PDB Entries 1JAL and 1NI3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277 12% PEG 3350, 50 mM TRIS/HCl, 10 mM MgCl2, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.47 64.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.253 α = 90 b = 159.831 β = 90 c = 55.129 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Mirrors 2005-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9764 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.8 0.084 16.3 7.2 17590 17590 -3 70.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 100 0.82 2.8 7.4 1797
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entries 1JAL and 1NI3 2.7 50 17589 17589 891 99.8 0.233 0.233 0.23 0.2282 0.288 0.2919 RANDOM 50.599
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.15 2.81 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.263 r_dihedral_angle_3_deg 16.622 r_dihedral_angle_4_deg 14.939 r_dihedral_angle_1_deg 7.013 r_scangle_it 6.21 r_scbond_it 4.612 r_mcangle_it 2.994 r_mcbond_it 2.256 r_angle_refined_deg 1.438 r_angle_other_deg 0.843
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.263 r_dihedral_angle_3_deg 16.622 r_dihedral_angle_4_deg 14.939 r_dihedral_angle_1_deg 7.013 r_scangle_it 6.21 r_scbond_it 4.612 r_mcangle_it 2.994 r_mcbond_it 2.256 r_angle_refined_deg 1.438 r_angle_other_deg 0.843 r_mcbond_other 0.462 r_nbd_refined 0.239 r_symmetry_vdw_other 0.234 r_symmetry_vdw_refined 0.202 r_nbtor_refined 0.195 r_nbd_other 0.182 r_xyhbond_nbd_refined 0.151 r_symmetry_hbond_refined 0.103 r_nbtor_other 0.09 r_chiral_restr 0.075 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2639 Nucleic Acid Atoms Solvent Atoms 26 Heterogen Atoms 31
Software Software Software Name Purpose MAR345 data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling