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The crystal structure of the molybdenum storage protein from Azotobacter vinelandii loaded with polyoxotungstates (WSto)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 0.05M MOPS, 0.05M sodium chloride, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.78 67.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.4 α = 90 b = 114.4 β = 90 c = 233.7 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors 2005-04-24 M SINGLE WAVELENGTH 2 1 x-ray CCD MARMOSAIC 225 mm CCD mirrors 2005-04-24 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9787 SLS X10SA 2 SYNCHROTRON SLS BEAMLINE X10SA 0.98 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.6 10 95.4 6.5 10.3 3.1 107052 107052
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 82.9 5.15 2 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 10 107052 107052 5682 95.72 0.17414 0.17414 0.17295 0.1878 0.19645 0.2107 RANDOM 25.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.78 0.39 0.78 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.749 r_dihedral_angle_4_deg 16.743 r_dihedral_angle_3_deg 14.523 r_dihedral_angle_1_deg 5.986 r_scangle_it 4.699 r_scbond_it 3.063 r_mcangle_it 2.028 r_angle_refined_deg 1.91 r_mcbond_it 1.292 r_metal_ion_refined 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.749 r_dihedral_angle_4_deg 16.743 r_dihedral_angle_3_deg 14.523 r_dihedral_angle_1_deg 5.986 r_scangle_it 4.699 r_scbond_it 3.063 r_mcangle_it 2.028 r_angle_refined_deg 1.91 r_mcbond_it 1.292 r_metal_ion_refined 0.37 r_nbtor_refined 0.323 r_symmetry_vdw_refined 0.232 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.166 r_symmetry_hbond_refined 0.141 r_chiral_restr 0.127 r_bond_refined_d 0.018 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3812 Nucleic Acid Atoms Solvent Atoms 391 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection XDS data reduction XDS data scaling SHELXD phasing