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1.00 A Crystal Structure Of V36A/D129A/L130A Mutant of Nitrophorin 4 From Rhodnius Prolixus Complexed With Nitric Oxide at pH 5.6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SXX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 300 ammonium phosphate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 1.96 37.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.191 α = 90 b = 42.637 β = 94.12 c = 52.975 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D 0.9 APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 52.85 94.1 0.1 0.1 37 4 79668
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.04 90.1 0.39 0.39 5.33 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1SXX 1 9.47 75093 4022 94.07 0.127 0.12586 0.1327 0.14795 0.1545 RANDOM 7.202
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.03 -0.17 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.393 r_dihedral_angle_3_deg 12.819 r_dihedral_angle_4_deg 12.353 r_sphericity_free 10.506 r_dihedral_angle_1_deg 7.747 r_sphericity_bonded 3.96 r_scangle_it 3.953 r_scbond_it 3.223 r_mcangle_it 2.379 r_mcbond_it 1.999
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.393 r_dihedral_angle_3_deg 12.819 r_dihedral_angle_4_deg 12.353 r_sphericity_free 10.506 r_dihedral_angle_1_deg 7.747 r_sphericity_bonded 3.96 r_scangle_it 3.953 r_scbond_it 3.223 r_mcangle_it 2.379 r_mcbond_it 1.999 r_angle_refined_deg 1.983 r_rigid_bond_restr 1.507 r_angle_other_deg 1.13 r_mcbond_other 0.794 r_nbd_refined 0.468 r_xyhbond_nbd_refined 0.269 r_metal_ion_refined 0.252 r_nbd_other 0.24 r_symmetry_vdw_other 0.215 r_symmetry_hbond_refined 0.209 r_nbtor_refined 0.191 r_symmetry_vdw_refined 0.157 r_chiral_restr 0.116 r_nbtor_other 0.093 r_bond_refined_d 0.02 r_gen_planes_refined 0.012 r_gen_planes_other 0.004 r_bond_other_d 0.003 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1793 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement CrystalClear data scaling