Solution structure of FK506-binding domain (FKBD)of FKBP35 from Plasmodium falciparum
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_13C-separated_NOESY | 0.5mM PfFKBP35FKBD U-15N, 13C; 20mM sodium phosphate (pH 6.8); 1mM DTT; 20mM NaCl; 0.01% NaN3; 100% D2O | 100% D2O | 20mM sodium phosphate | 6.8 | ambient | 298 | |
| 2 | 3D_15N-separated_NOESY | 0.5mM PfFKBP35FKBD U-15N, 13C; 20mM sodium phosphate (pH 6.8); 1mM DTT; 20mM NaCl; 0.01% NaN3; 90% H2O, 10% D2O | 90% H2O/10% D2O | 20mM sodium phosphate | 6.8 | ambient | 298 | |
| 3 | 2D NOESY | 0.5mM PfFKBP35FKBD U-15N, 13C; 20mM sodium phosphate (pH 6.8); 1mM DTT; 20mM NaCl; 0.01% NaN3; 100% D2O | 100% D2O | 20mM sodium phosphate | 6.8 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | TopSpin | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | TopSpin | 1.3 | Bruker |
| 2 | processing | NMRPipe | 2.3 | Delaglio |
| 3 | data analysis | NMRView | 5.2.2 | Johnson |
| 4 | refinement | CYANA | 2.1 | Guntert |
| 5 | refinement | ARIA | 1.2 | Linge;O'Donoghue;Nilges |
| 6 | refinement | CNS | 1.1 | Brunger |
