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The crystal structure of Glycogen Phosphorylase b in complex with a potent allosteric inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SMALL TUBES 6.7 289 Bes 10mM, EDTA, DTT, pH 6.7, SMALL TUBES, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.47 50.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.78 α = 90 b = 128.78 β = 90 c = 116.051 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD ADSC QUANTUM 4 2006-10-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 1.488 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 90.9 97.2 0.107 11.1 6.3 48704 48704 -3 32.592
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 95.5 0.431 4.7 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.2 90.9 46201 46201 2474 97.14 0.18525 0.18372 0.21316 RANDOM 31.392
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 0.66 -1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.943 r_dihedral_angle_4_deg 19.23 r_dihedral_angle_3_deg 15.58 r_dihedral_angle_1_deg 5.234 r_scangle_it 2.028 r_scbond_it 1.224 r_angle_refined_deg 1.071 r_mcangle_it 0.918 r_mcbond_it 0.537 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.943 r_dihedral_angle_4_deg 19.23 r_dihedral_angle_3_deg 15.58 r_dihedral_angle_1_deg 5.234 r_scangle_it 2.028 r_scbond_it 1.224 r_angle_refined_deg 1.071 r_mcangle_it 0.918 r_mcbond_it 0.537 r_nbtor_refined 0.302 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.132 r_symmetry_hbond_refined 0.12 r_xyhbond_nbd_refined 0.112 r_chiral_restr 0.077 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6604 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling