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Crystal structure of a putative dna-binding protein (reut_b4095) from ralstonia eutropha jmp134 at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 5.8 277 0.2M MgNO3, 20.0% PEG-3350, No Buffer pH 5.8, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.89 57.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.58 α = 90 b = 76.58 β = 90 c = 137.86 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2006-12-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97932, 0.97910 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.412 98.2 0.063 19.02 26996 30.103
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 90.9 0.628 3.1 4479
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 29.412 26956 1351 99.71 0.188 0.186 0.1918 0.219 0.2227 RANDOM 20.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 0.53 1.06 -1.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.266 r_dihedral_angle_4_deg 19.184 r_dihedral_angle_3_deg 12.018 r_scangle_it 5.665 r_dihedral_angle_1_deg 5.55 r_scbond_it 4.335 r_mcangle_it 2.397 r_mcbond_it 1.927 r_angle_refined_deg 1.511 r_angle_other_deg 1.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.266 r_dihedral_angle_4_deg 19.184 r_dihedral_angle_3_deg 12.018 r_scangle_it 5.665 r_dihedral_angle_1_deg 5.55 r_scbond_it 4.335 r_mcangle_it 2.397 r_mcbond_it 1.927 r_angle_refined_deg 1.511 r_angle_other_deg 1.009 r_mcbond_other 0.636 r_xyhbond_nbd_other 0.225 r_nbd_refined 0.221 r_symmetry_hbond_refined 0.218 r_xyhbond_nbd_refined 0.208 r_symmetry_vdw_refined 0.202 r_symmetry_vdw_other 0.198 r_nbd_other 0.195 r_nbtor_refined 0.173 r_chiral_restr 0.097 r_nbtor_other 0.088 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1177 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 5
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing SOLVE phasing