2OA2

Crystal structure of BH2720 (10175341) from Bacillus halodurans at 1.41 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP, NANODROP627710.0% MPD, 0.1M MES pH 6.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.0640.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.61α = 90
b = 68.61β = 90
c = 60.106γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDFlat mirror (vertical focusing)2006-11-19MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-10.91837, 0.97971, 0.97925SSRLBL11-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4148.50791.50.05121.482640023.109
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.411.4659.50.4572.61638

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.4148.50726355131493.470.1660.1650.189RANDOM19.041
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.85-0.851.69
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.417
r_dihedral_angle_4_deg20.268
r_dihedral_angle_3_deg12.415
r_dihedral_angle_1_deg6.165
r_scangle_it5.485
r_scbond_it4.168
r_mcangle_it2.666
r_mcbond_it2.006
r_angle_refined_deg1.709
r_angle_other_deg0.823
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.417
r_dihedral_angle_4_deg20.268
r_dihedral_angle_3_deg12.415
r_dihedral_angle_1_deg6.165
r_scangle_it5.485
r_scbond_it4.168
r_mcangle_it2.666
r_mcbond_it2.006
r_angle_refined_deg1.709
r_angle_other_deg0.823
r_mcbond_other0.5
r_symmetry_vdw_other0.278
r_nbd_refined0.198
r_nbd_other0.186
r_nbtor_refined0.175
r_xyhbond_nbd_refined0.162
r_symmetry_hbond_refined0.141
r_chiral_restr0.101
r_nbtor_other0.088
r_symmetry_vdw_refined0.058
r_bond_refined_d0.017
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1052
Nucleic Acid Atoms
Solvent Atoms143
Heterogen Atoms

Software

Software
Software NamePurpose
MolProbitymodel building
SHELXphasing
REFMACrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
SHELXDphasing
autoSHARPphasing