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Crystal structure of Mammalian Dimeric Dihydrodiol Dehydrogenase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 295 2M ammonium sulphate, 0.1M sodium citrate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.63 66.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.853 α = 90 b = 122.853 β = 90 c = 121.664 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2003-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.59 19.9 98.076 20.9 17358 17024 1 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.59 2.68 95.6 3.759
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.59 19.9 4 17024 16165 859 97.83 0.1991 0.16344 0.16013 0.1606 0.22776 0.228 RANDOM 19.051
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.02 -0.03 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.464 r_dihedral_angle_4_deg 18.239 r_dihedral_angle_3_deg 16.646 r_dihedral_angle_1_deg 6.478 r_scangle_it 4.919 r_scbond_it 3.058 r_angle_refined_deg 1.889 r_mcangle_it 1.758 r_mcbond_it 1.058 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.464 r_dihedral_angle_4_deg 18.239 r_dihedral_angle_3_deg 16.646 r_dihedral_angle_1_deg 6.478 r_scangle_it 4.919 r_scbond_it 3.058 r_angle_refined_deg 1.889 r_mcangle_it 1.758 r_mcbond_it 1.058 r_nbtor_refined 0.313 r_symmetry_vdw_refined 0.228 r_nbd_refined 0.227 r_xyhbond_nbd_refined 0.185 r_symmetry_hbond_refined 0.185 r_chiral_restr 0.137 r_bond_refined_d 0.02 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2529 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling MLPHARE phasing