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Crystal structure of a putative had-like phosphatase (mll2559) from mesorhizobium loti at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 6.64 277 28.5% polyethylene glycol 6000, 0.1M HEPES pH 6.64, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.99 38.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.48 α = 90 b = 66.27 β = 108.53 c = 41.02 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2006-11-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97978 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 28.262 94.8 0.046 11.11 3.71 29534 12.94
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 88.8 0.271 2.88 4527
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 28.262 29513 1499 99.57 0.139 0.138 0.148 0.167 0.1757 RANDOM 13.085
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 -0.75 -0.22 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.741 r_dihedral_angle_4_deg 16.713 r_dihedral_angle_3_deg 10.84 r_dihedral_angle_1_deg 5.645 r_scangle_it 5.59 r_scbond_it 3.621 r_mcangle_it 2.337 r_mcbond_it 1.72 r_angle_refined_deg 1.457 r_angle_other_deg 0.826
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.741 r_dihedral_angle_4_deg 16.713 r_dihedral_angle_3_deg 10.84 r_dihedral_angle_1_deg 5.645 r_scangle_it 5.59 r_scbond_it 3.621 r_mcangle_it 2.337 r_mcbond_it 1.72 r_angle_refined_deg 1.457 r_angle_other_deg 0.826 r_mcbond_other 0.405 r_nbd_refined 0.207 r_symmetry_hbond_refined 0.189 r_nbd_other 0.187 r_xyhbond_nbd_refined 0.182 r_nbtor_refined 0.175 r_symmetry_vdw_other 0.17 r_symmetry_vdw_refined 0.105 r_chiral_restr 0.084 r_nbtor_other 0.081 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1566 Nucleic Acid Atoms Solvent Atoms 328 Heterogen Atoms 12
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing