☰ Navigation Tabs
Crystal structure of human JNK3 complexed with N-{3-cyano-6-[3-(1-piperidinyl)propanoyl]-4,5,6,7-tetrahydrothieno[2,3-c]pyridin-2-yl}-1-naphthalenecarboxamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 50mM Tris/HCl, 18-22% PEG3350, 0.2M KF, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.42 49.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.793 α = 90 b = 71.653 β = 90 c = 107.857 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9326 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 25 97.2 0.049 21.4 4.4 27722
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 97.1 0.281 4.1 1374
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.1 59.66 23713 971 96.53 0.225 0.223 0.2327 0.283 0.287 RANDOM 22.363
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.57 -2.77 -3.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.405 r_dihedral_angle_4_deg 22.301 r_dihedral_angle_3_deg 18.942 r_dihedral_angle_1_deg 6.985 r_scangle_it 2.881 r_scbond_it 2.084 r_angle_refined_deg 1.877 r_mcangle_it 1.332 r_mcbond_it 1.147 r_angle_other_deg 0.993
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.405 r_dihedral_angle_4_deg 22.301 r_dihedral_angle_3_deg 18.942 r_dihedral_angle_1_deg 6.985 r_scangle_it 2.881 r_scbond_it 2.084 r_angle_refined_deg 1.877 r_mcangle_it 1.332 r_mcbond_it 1.147 r_angle_other_deg 0.993 r_symmetry_vdw_other 0.28 r_symmetry_hbond_refined 0.274 r_symmetry_vdw_refined 0.271 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.203 r_nbd_other 0.201 r_mcbond_other 0.199 r_nbtor_refined 0.191 r_chiral_restr 0.122 r_nbtor_other 0.092 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2700 Nucleic Acid Atoms Solvent Atoms 165 Heterogen Atoms 34
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction